Microbial metabolism in diverse environments

Pathway
Source ID Pathway KEGG pae01120
Metabolites
PAMDB ID Metabolite Name View PAMDB000856 (2-Naphthyl)methanol MetaboCard PAMDB004261 (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate MetaboCard PAMDB000859 (3S)-3-Hydroxyadipyl-CoA MetaboCard PAMDB004860 (S)-Lactaldehyde MetaboCard PAMDB000448 (S)-Methylmalonic acid semialdehyde MetaboCard PAMDB000223 (S)-Ureidoglycolic acid MetaboCard PAMDB000870 1-Hydroxymethylnaphthalene MetaboCard PAMDB000588 2,3-Dihydrodipicolinic acid MetaboCard PAMDB000262 2-Aminobenzoic acid MetaboCard PAMDB002038 2-Dehydro-3-deoxy-L-rhamnonate MetaboCard PAMDB000363 2-Keto-3-deoxy-6-phosphogluconic acid MetaboCard PAMDB000896 2-Naphthaldehyde MetaboCard PAMDB000690 2-Oxo-3-hydroxy-4-phosphobutanoic acid MetaboCard PAMDB000626 2-Phospho-D-glyceric acid MetaboCard PAMDB000396 3-Hydroxyanthranilic acid MetaboCard PAMDB000280 3-Hydroxybutyryl-CoA MetaboCard PAMDB000926 3-Oxoadipyl-CoA MetaboCard PAMDB002039 3-Phospho-D-glycerate MetaboCard PAMDB001422 3-Sulfopyruvic acid MetaboCard PAMDB003531 3-phospho-D-glyceroyl phosphate MetaboCard PAMDB000143 4-Hydroxybenzoic acid MetaboCard PAMDB000305 4-Nitrophenol MetaboCard PAMDB001585 5,10-Methenyltetrahydrofolate MetaboCard PAMDB000353 5,10-Methylene-THF MetaboCard PAMDB000635 5-Amino-6-ribitylamino uracil MetaboCard PAMDB000949 5-Carboxy-2-pentenoyl-CoA MetaboCard PAMDB000368 5-Methyltetrahydrofolic acid MetaboCard PAMDB000336 6-Phosphogluconic acid MetaboCard PAMDB000264 6-Phosphonoglucono-D-lactone MetaboCard PAMDB000959 8-Amino-7-oxononanoate MetaboCard PAMDB000345 ADP MetaboCard PAMDB000217 Acetaldehyde MetaboCard PAMDB000012 Acetic acid MetaboCard PAMDB000397 Acetoacetyl-CoA MetaboCard PAMDB000298 Acetyl-CoA MetaboCard PAMDB000402 Acetylphosphate MetaboCard PAMDB000455 Acrylyl-CoA MetaboCard PAMDB000022 Adenosine 3',5'-diphosphate MetaboCard PAMDB000014 Adenosine monophosphate MetaboCard PAMDB000222 Adenosine phosphosulfate MetaboCard PAMDB000148 Adenosine triphosphate MetaboCard PAMDB002040 Aldehyde MetaboCard PAMDB003454 Alpha-D-glucose 6-phosphate MetaboCard PAMDB000017 Ammonia MetaboCard PAMDB000968 Benzoyl acetyl-CoA MetaboCard PAMDB000253 Carbamoylphosphate MetaboCard PAMDB000568 Carbon dioxide MetaboCard PAMDB000034 Citric acid MetaboCard PAMDB000381 Coenzyme A MetaboCard PAMDB000429 Crotonoyl-CoA MetaboCard PAMDB000438 Cyanide MetaboCard PAMDB000155 D-2-Hydroxyglutaric acid MetaboCard PAMDB000460 D-Erythrose 4-phosphate MetaboCard PAMDB000045 D-Glucose MetaboCard PAMDB000257 D-Glyceraldehyde 3-phosphate MetaboCard PAMDB000673 D-Lactaldehyde MetaboCard PAMDB000334 D-Lactic acid MetaboCard PAMDB000431 D-Ribose-5-phosphate MetaboCard PAMDB000638 D-Ribulose 5-phosphate MetaboCard PAMDB000240 D-Sedoheptulose 7-phosphate MetaboCard PAMDB000497 D-Serine MetaboCard PAMDB000360 Diaminopimelic acid MetaboCard PAMDB000395 Dihydroxyacetone phosphate MetaboCard PAMDB004301 Enzyme N6-(dihydrolipoyl)lysine MetaboCard PAMDB000041 Ethanol MetaboCard PAMDB001161 Ethylphosphonate MetaboCard PAMDB002046 Ferricytochrome c MetaboCard PAMDB003525 Ferrocytochrome c MetaboCard PAMDB000382 Formaldehyde MetaboCard PAMDB000053 Formic acid MetaboCard PAMDB000236 Fructose 1,6-bisphosphate MetaboCard PAMDB000047 Fructose 6-phosphate MetaboCard PAMDB000073 Fumaric acid MetaboCard PAMDB000452 Gallic acid MetaboCard PAMDB000160 Gluconic acid MetaboCard PAMDB000057 Gluconolactone MetaboCard PAMDB000423 Glucose 1-phosphate MetaboCard PAMDB000372 Glucose 6-phosphate MetaboCard PAMDB000344 Glutaryl-CoA MetaboCard PAMDB000048 Glutathione MetaboCard PAMDB000597 Glyceric acid MetaboCard PAMDB000317 Glyceric acid 1,3-biphosphate MetaboCard PAMDB000046 Glycine MetaboCard PAMDB000444 Glycolaldehyde MetaboCard PAMDB004153 Glycolate MetaboCard PAMDB000475 Glycolic acid MetaboCard PAMDB000043 Glyoxylic acid MetaboCard PAMDB000355 Hydrogen (gas) MetaboCard PAMDB000153 Hydrogen carbonate MetaboCard PAMDB001633 Hydrogen ion MetaboCard PAMDB001640 Hydrogen peroxide MetaboCard PAMDB000486 Hydrogen sulfide MetaboCard PAMDB000459 Hydroquinone MetaboCard PAMDB000351 Hydroxypyruvic acid MetaboCard PAMDB000062 Inositol MetaboCard PAMDB000604 Isocitric acid MetaboCard PAMDB000063 L-Alanine MetaboCard PAMDB000833 L-Aspartate-semialdehyde MetaboCard PAMDB000080 L-Aspartic acid MetaboCard PAMDB000834 L-Aspartyl-4-phosphate MetaboCard PAMDB000152 L-Cysteine MetaboCard PAMDB000055 L-Glutamate MetaboCard PAMDB000163 L-Glutamine MetaboCard PAMDB000449 L-Homoserine MetaboCard PAMDB000079 L-Lactic acid MetaboCard PAMDB000075 L-Lysine MetaboCard PAMDB000058 L-Malic acid MetaboCard PAMDB000077 L-Serine MetaboCard PAMDB000068 L-Threonine MetaboCard PAMDB000474 Malonic semialdehyde MetaboCard PAMDB000284 Malonyl-CoA MetaboCard PAMDB002055 Meso-2,6-Diaminoheptanedioate MetaboCard PAMDB000425 Methanol MetaboCard PAMDB000603 Myoinositol MetaboCard PAMDB000835 N-Succinyl-2-amino-6-ketopimelate MetaboCard PAMDB000836 N-Succinyl-L,L-2,6-diaminopimelate MetaboCard PAMDB000213 N10-Formyl-THF MetaboCard PAMDB000197 NAD MetaboCard PAMDB000398 NADH MetaboCard PAMDB000089 NADP MetaboCard PAMDB000615 NADPH MetaboCard PAMDB000468 Nitrate MetaboCard PAMDB000495 Nitric oxide MetaboCard PAMDB000465 Nitrite MetaboCard PAMDB000473 O-Acetylserine MetaboCard PAMDB000691 O-Phospho-4-hydroxy-L-threonine MetaboCard PAMDB000505 O-Phosphohomoserine MetaboCard PAMDB000092 Oxalacetic acid MetaboCard PAMDB000548 Oxalosuccinic acid MetaboCard PAMDB000623 Oxoglutaric acid MetaboCard PAMDB000624 Oxygen MetaboCard PAMDB000383 Phosphate MetaboCard PAMDB000269 Phosphoadenosine phosphosulfate MetaboCard PAMDB000111 Phosphoenolpyruvic acid MetaboCard PAMDB000229 Phosphohydroxypyruvic acid MetaboCard PAMDB001843 Phosphonoacetate MetaboCard PAMDB000115 Phosphoribosyl pyrophosphate MetaboCard PAMDB000113 Phosphoserine MetaboCard PAMDB004402 Pimeloyl-[acyl-carrier protein] MetaboCard PAMDB000098 Propionic acid MetaboCard PAMDB000321 Propionyl-CoA MetaboCard PAMDB000400 Pyridoxal 5'-phosphate MetaboCard PAMDB000420 Pyridoxamine 5'-phosphate MetaboCard PAMDB000338 Pyridoxine 5'-phosphate MetaboCard PAMDB000633 Pyrophosphate MetaboCard PAMDB000281 Pyruvaldehyde MetaboCard PAMDB000102 Pyruvic acid MetaboCard PAMDB003450 Quinone MetaboCard PAMDB000659 S-(Hydroxymethyl)glutathione MetaboCard PAMDB000417 S-Formylglutathione MetaboCard PAMDB000107 Succinic acid MetaboCard PAMDB000313 Succinic acid semialdehyde MetaboCard PAMDB000228 Succinyl-CoA MetaboCard PAMDB000391 Sulfate MetaboCard PAMDB000100 Sulfite MetaboCard PAMDB000840 Tetrahydrodipicolinate MetaboCard PAMDB000424 Tetrahydrofolic acid MetaboCard PAMDB001695 Thiocyanate MetaboCard PAMDB004174 Thioredoxin MetaboCard PAMDB000108 Thiosulfate MetaboCard PAMDB000652 Urea MetaboCard PAMDB000119 Uric acid MetaboCard PAMDB000142 Water MetaboCard PAMDB000121 Xanthine MetaboCard PAMDB000653 Xylulose 5-phosphate MetaboCard PAMDB000492 alpha-D-Glucose MetaboCard PAMDB000466 alpha-Ketoglutarate MetaboCard PAMDB000145 b-D-Glucose MetaboCard PAMDB000971 beta-D-Fructose 1,6-bisphosphate MetaboCard PAMDB000547 beta-D-Fructose 6-phosphate MetaboCard PAMDB000506 beta-D-Glucose 6-phosphate MetaboCard PAMDB000025 cis-Aconitic acid MetaboCard PAMDB000367 p-Aminobenzoic acid MetaboCard
Proteins
Genome ID Protein Name View PA3666 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase ProteinCard PA4128 2-keto-3-deoxy-L-rhamnonate aldolase ProteinCard PA1585 2-oxoglutarate dehydrogenase E1 component ProteinCard PA5175 3'(2'),5'-bisphosphate nucleotidase cysQ ProteinCard PA3013 3-ketoacyl-CoA thiolase ProteinCard PA0430 5,10-methylenetetrahydrofolate reductase ProteinCard PA3182 6-phosphogluconolactonase ProteinCard PA0501 8-amino-7-oxononanoate synthase ProteinCard PA0836 Acetate kinase ProteinCard PA2001 Acetyl-CoA acetyltransferase ProteinCard PA3639 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ProteinCard PA3112 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta ProteinCard PA0887 Acetyl-coenzyme A synthetase ProteinCard PA1562 Aconitate hydratase 1 ProteinCard PA1787 Aconitate hydratase 2 ProteinCard PA1393 Adenylyl-sulfate kinase ProteinCard PA3296 Alkaline phosphatase ProteinCard PA3117 Aspartate-semialdehyde dehydrogenase ProteinCard PA0228 Beta-ketoadipyl-CoA thiolase ProteinCard PA1796 Bifunctional protein folD ProteinCard PA5173 Carbamate kinase ProteinCard PA1580 Citrate synthase ProteinCard PA1409 Class B acid phosphatase ProteinCard PA0316 D-3-phosphoglycerate dehydrogenase ProteinCard PA0927 D-lactate dehydrogenase_ ProteinCard PA5277 Diaminopimelate decarboxylase ProteinCard PA5278 Diaminopimelate epimerase ProteinCard PA5016 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex ProteinCard PA1586 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex ProteinCard PA3635 Enolase ProteinCard PA3014 Fatty acid oxidation complex subunit alpha ProteinCard PA4812 Formate dehydrogenase, nitrate-inducible, major subunit ProteinCard PA5110 Fructose-1,6-bisphosphatase class 1 ProteinCard PA0854 Fumarate hydratase class II ProteinCard PA4483 Galactitol-specific phosphotransferase enzyme IIA component ProteinCard PA4484 Galactitol-specific phosphotransferase enzyme IIB component ProteinCard PA3193 Glucokinase ProteinCard PA4732 Glucose-6-phosphate isomerase ProteinCard PA5036 Glutamate synthase [NADPH] large chain ProteinCard PA5035 Glutamate synthase [NADPH] small chain ProteinCard PA5119 Glutamine synthetase ProteinCard PA3195 Glyceraldehyde-3-phosphate dehydrogenase A ProteinCard PA5355 Glycolate oxidase subunit glcD ProteinCard PA2263 Glyoxylate/hydroxypyruvate reductase B ProteinCard PA5495 Homoserine kinase ProteinCard PA2623 Isocitrate dehydrogenase [NADP] ProteinCard PA2634 Isocitrate lyase ProteinCard PA0902 Low specificity L-threonine aldolase ProteinCard PA0904 Lysine-sensitive aspartokinase 3 ProteinCard PA0482 Malate synthase G ProteinCard PA3452 Malate:quinone oxidoreductase ProteinCard PA1135 Molecular chaperone Hsp31 and glyoxalase 3 ProteinCard PA5046 NADP-dependent malic enzyme ProteinCard PA3761 PTS system N-acetylglucosamine-specific EIICBA component ProteinCard PA3560 PTS system fructose-specific EIIBC component ProteinCard PA1174 Periplasmic nitrate reductase ProteinCard PA0835 Phosphate acetyltransferase ProteinCard PA1756 Phosphoadenosine phosphosulfate reductase ProteinCard PA5192 Phosphoenolpyruvate carboxykinase [ATP] ProteinCard PA3687 Phosphoenolpyruvate carboxylase ProteinCard PA1770 Phosphoenolpyruvate synthase ProteinCard PA3194 Phosphogluconate dehydratase ProteinCard PA0552 Phosphoglycerate kinase ProteinCard PA3167 Phosphoserine aminotransferase ProteinCard PA1932 Putative xanthine dehydrogenase yagS FAD-binding subunit ProteinCard PA1049 Pyridoxine/pyridoxamine 5'-phosphate oxidase ProteinCard PA5015 Pyruvate dehydrogenase E1 component ProteinCard PA1498 Pyruvate kinase I ProteinCard PA4329 Pyruvate kinase II ProteinCard PA3875 Respiratory nitrate reductase 1 alpha chain ProteinCard PA3874 Respiratory nitrate reductase 1 beta chain ProteinCard PA3872 Respiratory nitrate reductase 1 gamma chain ProteinCard PA0330 Ribose-5-phosphate isomerase A ProteinCard PA4670 Ribose-phosphate pyrophosphokinase ProteinCard PA0607 Ribulose-phosphate 3-epimerase ProteinCard PA3629 S-(hydroxymethyl)glutathione dehydrogenase ProteinCard PA3628 S-formylglutathione hydrolase yeiG ProteinCard PA3816 Serine acetyltransferase ProteinCard PA4602 Serine hydroxymethyltransferase ProteinCard PA0265 Succinate-semialdehyde dehydrogenase [NADP+] ProteinCard PA1589 Succinyl-CoA ligase [ADP-forming] subunit alpha ProteinCard PA1588 Succinyl-CoA ligase [ADP-forming] subunit beta ProteinCard PA1162 Succinyl-diaminopimelate desuccinylase ProteinCard PA4442 Sulfate adenylyltransferase subunit 1 ProteinCard PA4443 Sulfate adenylyltransferase subunit 2 ProteinCard PA1838 Sulfite reductase [NADPH] hemoprotein beta-component ProteinCard PA0589 Thiosulfate sulfurtransferase glpE ProteinCard PA3735 Threonine synthase ProteinCard PA2796 Transaldolase B ProteinCard PA0548 Transketolase 1 ProteinCard PA4748 Triosephosphate isomerase ProteinCard PA1523 Xanthine dehydrogenase FAD-binding subunit ProteinCard PA1524 Xanthine dehydrogenase molybdenum-binding subunit ProteinCard PA0128 conserved protein ProteinCard