P. aeruginosa Metabolome Database: Hydrogen ion (PAMDB001633)

Identification Taxonomy Physical Properties Biological Properties Spectra Concentrations Links References Enzymes Transporters

Proteins (3280)

Record Information

Version

1.0

Update Date

1/22/2018 11:54:54 AM

Metabolite ID

PAMDB001633

Identification

Name:

Hydrogen ion

Description:

Hydrogen ion is recommended by IUPAC as a general term for all ions of hydrogen and its isotopes. Depending on the charge of the ion, two different classes can be distinguished: positively charged ions and negatively charged ions. Under aqueous conditions found in biochemistry, hydrogen ions exist as the hydrated form hydronium, H3O+, but these are often still referred to as hydrogen ions or even protons by biochemists. (WikiPedia)

Structure

🔍MOL SDF PDB SMILES InChI View Structure

Synonyms:

H
H(+)
H+
Hydrogen ion
Hydron
Proton

Chemical Formula:

Average Molecular Weight:

1.0079

Monoisotopic Molecular Weight:

1.007825032

InChI Key:

GPRLSGONYQIRFK-UHFFFAOYSA-N

InChI:

InChI=1S/p+1

CAS number:

Not Available

IUPAC Name:

hydron

Traditional IUPAC Name:

hydron

SMILES:

[H+]

Chemical Taxonomy

Taxonomy Description

This compound belongs to the class of inorganic compounds known as other non-metal hydrides. These are inorganic compounds in which the heaviest atom bonded to a hydrogen atom is belongs to the class of 'other non-metals'.

Kingdom

Inorganic compounds

Super Class

Homogeneous non-metal compounds

Class

Other non-metal organides

Sub Class

Other non-metal hydrides

Direct Parent

Other non-metal hydrides

Alternative Parents

Not Available

Substituents

Other non-metal hydride
Acyclic compound

Molecular Framework

Acyclic compounds

External Descriptors

atomic nucleus (CHEBI:15378 )
monovalent inorganic cation (CHEBI:15378 )
monoatomic monocation (CHEBI:15378 )
monoatomic hydrogen (CHEBI:15378 )
a cation (PROTON )
a subatomic particle (PROTON )

Physical Properties

State:

Not Available

Charge:

Melting point:

Not Available

Experimental Properties:

Property	Value	Source

Predicted Properties

Property	Value	Source
logP	0	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Polarizability	0.52 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	1	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Biological Properties

Cellular Locations:

Cytoplasm

Reactions:

-->-->Adenosine triphosphate + Water + Isethionic acid > ADP + Hydrogen ion + Isethionic acid + Phosphate
Coenzyme A + 2 flavodoxin semi oxidized + Pyruvic acid <> Acetyl-CoA + Carbon dioxide +2 Flavodoxin reduced + Hydrogen ion
Cytidine triphosphate + 2 Flavodoxin reduced + 2 Hydrogen ion > dCTP +2 flavodoxin semi oxidized + Water
Adenosine triphosphate + 2 Flavodoxin reduced + 2 Hydrogen ion > dATP +2 flavodoxin semi oxidized + Water
2 Flavodoxin reduced + Guanosine triphosphate + 2 Hydrogen ion > dGTP +2 flavodoxin semi oxidized + Water
2 Flavodoxin reduced + 2 Hydrogen ion + Uridine triphosphate > Deoxyuridine triphosphate +2 flavodoxin semi oxidized + Water
2 flavodoxin semi oxidized + NADPH >2 Flavodoxin reduced + Hydrogen ion + NADP
Adenosine triphosphate + Water + Potassium > ADP + Hydrogen ion + Potassium + Phosphate
Adenosine triphosphate + Water + Molybdate > ADP + Hydrogen ion + Molybdate + Phosphate
Adenosine triphosphate + Water + Putrescine > ADP + Hydrogen ion + Phosphate + Putrescine
Hydrogen ion + Menaquinol 8 + Trimethylamine N-Oxide > Water + Menaquinone 8 + Trimethylamine
Adenosine triphosphate + Water + Butanesulfonate > ADP + Butanesulfonate + Hydrogen ion + Phosphate
2 Hydrogen ion + Hydrogen (gas) + Ubiquinone-8 > Ubiquinol-8 +2 Hydrogen ion
2 Hydrogen ion + Hydrogen (gas) + Ubiquinone-8 > Ubiquinol-8 +2 Hydrogen ion
2-Demethylmenaquinone 8 + 2 Hydrogen ion + Hydrogen (gas) > 2-Demethylmenaquinol 8 +2 Hydrogen ion
2-Demethylmenaquinone 8 + 2 Hydrogen ion + Hydrogen (gas) > 2-Demethylmenaquinol 8 +2 Hydrogen ion
2 Hydrogen ion + Hydrogen (gas) + Menaquinone 8 > Menaquinol 8 +2 Hydrogen ion
2 Hydrogen ion + Hydrogen (gas) + Menaquinone 8 > Menaquinol 8 +2 Hydrogen ion
2 Hydrogen ion + Oxygen + Ubiquinol-8 > Water + Ubiquinone-8 +2 Hydrogen ion
2 Hydrogen ion + Oxygen + Ubiquinol-8 > Water + Ubiquinone-8 +2 Hydrogen ion
2-Demethylmenaquinol 8 + Hydrogen ion + Trimethylamine N-Oxide > 2-Demethylmenaquinone 8 + Water + Trimethylamine
Adenosine triphosphate + Water + Spermidine > ADP + Hydrogen ion + Phosphate + Spermidine

More...

Pathways:

1- and 2-Methylnaphthalene degradation pae00624
3-Chloroacrylic acid degradation pae00641
Alanine, aspartate and glutamate metabolism pae00250
Amino sugar and nucleotide sugar metabolism pae00520
Arginine and proline metabolism pae00330
Ascorbate and aldarate metabolism pae00053
Benzoate degradation via CoA ligation pae00632
Benzoate degradation via hydroxylation pae00362
Biosynthesis of siderophore group nonribosomal peptides pae01053
Biosynthesis of unsaturated fatty acids pae01040
Biotin metabolism pae00780
Biphenyl degradation pae00621
Butanoate metabolism pae00650
Butirosin and neomycin biosynthesis pae00524
C5-Branched dibasic acid metabolism pae00660
Caprolactam degradation pae00930
Carbon fixation in photosynthetic organisms pae00710
Chloroalkane and chloroalkene degradation pae00625
Citrate cycle (TCA cycle) pae00020
Cysteine and methionine metabolism pae00270
D-Glutamine and D-glutamate metabolism pae00471
Drug metabolism - cytochrome P450 pae00982
Drug metabolism - other enzymes pae00983
Fatty acid biosynthesis pae00061
Fatty acid metabolism pae00071
Flagellar assembly pae02040
Folate biosynthesis pae00790
Fructose and mannose metabolism pae00051
Galactose metabolism pae00052
Glutathione metabolism pae00480
Glycerolipid metabolism pae00561
Glycerophospholipid metabolism pae00564
Glycine, serine and threonine metabolism pae00260
Glycolysis / Gluconeogenesis pae00010
Glyoxylate and dicarboxylate metabolism pae00630
Histidine metabolism pae00340
Lipoic acid metabolism pae00785
Lipopolysaccharide biosynthesis pae00540
Lysine biosynthesis pae00300
Metabolic pathways pae01100
Metabolism of xenobiotics by cytochrome P450 pae00980
Methane metabolism pae00680
Microbial metabolism in diverse environments pae01120
Monobactam biosynthesis pae00261
Naphthalene degradation pae00626
Nitrogen metabolism pae00910
One carbon pool by folate pae00670
Oxidative phosphorylation pae00190
Pantothenate and CoA biosynthesis pae00770
Pentose and glucuronate interconversions pae00040
Pentose phosphate pathway pae00030
Peptidoglycan biosynthesis pae00550
Phenylalanine metabolism pae00360
Phenylalanine, tyrosine and tryptophan biosynthesis pae00400
Photosynthesis pae00195
Polyketide sugar unit biosynthesis pae00523
Porphyrin and chlorophyll metabolism pae00860
Propanoate metabolism pae00640
Purine metabolism pae00230
Pyrimidine metabolism pae00240
Pyruvate metabolism pae00620
Reductive carboxylate cycle (CO2 fixation) pae00720
Retinol metabolism pae00830
Riboflavin metabolism pae00740
Selenoamino acid metabolism pae00450
Starch and sucrose metabolism pae00500
Streptomycin biosynthesis pae00521
Styrene degradation pae00643
Sulfur metabolism pae00920
Terpenoid backbone biosynthesis pae00900
Thiamine metabolism pae00730
Toluene and xylene degradation pae00622
Trinitrotoluene degradation pae00633
Tryptophan metabolism pae00380
Tyrosine metabolism pae00350
Ubiquinone and other terpenoid-quinone biosynthesis pae00130
Valine, leucine and isoleucine biosynthesis pae00290
Valine, leucine and isoleucine degradation pae00280
Vitamin B6 metabolism pae00750
alpha-Linolenic acid metabolism pae00592
beta-Alanine metabolism pae00410

Spectra

Spectra:

Spectrum Type	Description	Splash Key
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0udi-9000000000-1d1de5a5c37fe86ebc2f	View in MoNA
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0udi-9000000000-1d1de5a5c37fe86ebc2f	View in MoNA
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0udi-9000000000-1d1de5a5c37fe86ebc2f	View in MoNA
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0udi-9000000000-cb753f988e32a89d6a3a	View in MoNA
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0udi-9000000000-cb753f988e32a89d6a3a	View in MoNA
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0udi-9000000000-cb753f988e32a89d6a3a	View in MoNA

References

References:

Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590. Pubmed: 21097882

Synthesis Reference:

Not Available

Material Safety Data Sheet (MSDS)

Not Available

Links

External Links:

Resource	Link
CHEBI ID	15378
HMDB ID	HMDB59597
Pubchem Compound ID	1038
Kegg ID	C00080
ChemSpider ID	1010
Wikipedia ID	Hydrogen ion
BioCyc ID	PROTON
EcoCyc ID	PROTON

Hydrogen ion (PAMDB001633)

Structure for Hydrogen ion (PAMDB001633)