DNA-directed RNA polymerase subunit omega (PA5337)

Identification
Name: DNA-directed RNA polymerase subunit omega
Synonyms:
  • RNAP omega subunit
  • RNA polymerase omega subunit
  • Transcriptase subunit omega
Gene Name: rpoZ
Enzyme Class:
Biological Properties
General Function: Involved in DNA-directed RNA polymerase activity
Specific Function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
Cellular Location: Cytoplasmic
KEGG Pathways:
KEGG Reactions:
Thumb+RNA+RNA ↔ Thumb+RNA
Adenosine triphosphate + RNA + RNA ↔ Pyrophosphate + RNA
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Thumb+RNA ↔ Thumb+RNA
Guanosine triphosphate + RNA ↔ Pyrophosphate + RNA
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Thumb+RNA ↔ Thumb+RNA
Cytidine triphosphate + RNA ↔ Pyrophosphate + RNA
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Thumb+RNA ↔ Thumb+RNA
Uridine triphosphate + RNA ↔ Pyrophosphate + RNA
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Nucleoside triphosphate+RNA ↔ Thumb
Nucleoside triphosphate + RNA ↔ Pyrophosphate
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SMPDB Reactions: Not Available
PseudoCyc/BioCyc Reactions:
Thumb+RNA+RNA ↔ Thumb+RNA
Adenosine triphosphate + RNA + RNA ↔ Pyrophosphate + RNA
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Thumb+RNA ↔ Thumb+RNA
Guanosine triphosphate + RNA ↔ Pyrophosphate + RNA
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Thumb+RNA ↔ Thumb+RNA
Cytidine triphosphate + RNA ↔ Pyrophosphate + RNA
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Thumb+RNA ↔ Thumb+RNA
Uridine triphosphate + RNA ↔ Pyrophosphate + RNA
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Nucleoside triphosphate+RNA(n) → Thumb+RNA(n+1)
Nucleoside triphosphate + RNA(n) → Pyrophosphate + RNA(n+1)
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Nucleoside triphosphate+RNA ↔ Thumb
Nucleoside triphosphate + RNA ↔ Pyrophosphate
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Complex Reactions:
Nucleoside triphosphate+RNA(n) → Thumb+RNA(n+1)
Nucleoside triphosphate + RNA(n) → Pyrophosphate + RNA(n+1)
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Transports: Not Available
Metabolites:
PAMDB IDNameView
PAMDB000148Adenosine triphosphateMetaboCard
PAMDB000030Cytidine triphosphateMetaboCard
PAMDB000319Guanosine triphosphateMetaboCard
PAMDB000633PyrophosphateMetaboCard
PAMDB000117Uridine triphosphateMetaboCard
GO Classification:
Function
binding
catalytic activity
DNA binding
DNA-directed RNA polymerase activity
nucleic acid binding
nucleotidyltransferase activity
RNA polymerase activity
transferase activity
transferase activity, transferring phosphorus-containing groups
Process
biosynthetic process
cellular macromolecule biosynthetic process
macromolecule biosynthetic process
metabolic process
transcription
transcription, DNA-dependent
Gene Properties
Locus tag: PA5337
Strand: +
Entrez Gene ID: 878048
Accession: NP_254024.1
GI: 15600530
Sequence start: 6005899
Sequence End: 6006165
Sequence Length: 266
Gene Sequence: 
>PA5337
ATGGCCCGCGTCACCGTTGAAGACTGCCTGGACAACGTCGATAACCGTTTCGAGCTGGTCATGCTCGCCACCAAGCGCGCCCGTCAGCTGGCTACCGGCGGCAAGGAGCCGAAAGTGGCCTGGGAAAACGACAAGCCGACCGTCGTCGCCCTGCGCGAGATCGCTTCCGGCCTGGTCGATGAGAACGTCGTCCAGCAGGAAGACATCGTCGAGGACGAACCGCTGTTCGCAGCGTTCGACGACGAGGCCAACACCGAGGCCCTGTAA
Protein Properties
Protein Residues: 88
Protein Molecular Weight: 9.8 kDa
Protein Theoretical pI: 3.95
Hydropathicity (GRAVY score): -0.309
Charge at pH 7 (predicted): -11.03
Protein Sequence: 
>PA5337
MARVTVEDCLDNVDNRFELVMLATKRARQLATGGKEPKVAWENDKPTVVALREIASGLVDENVVQQEDIVEDEPLFAAFDDEANTEAL
References
External Links:
Resource Link
Genome ID: PA5337
Entrez Gene ID: 878048
NCBI Protein ID: 15600530
General Reference: PaperBLAST - Find papers about PA5337 and its homologs