Identification
Name: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Synonyms:
  • Polyprenyl p-hydroxybenzoate decarboxylase
Gene Name: ubiD
Enzyme Class:
Biological Properties
General Function: Involved in carboxy-lyase activity
Specific Function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol
Cellular Location: Cell membrane; Peripheral membrane protein (Probable)
KEGG Pathways:
KEGG Reactions:
Thumb+ThumbThumb+Thumb
2-Polyprenylphenol+Thumb+Thumb4-Hydroxy-3-polyprenylbenzoate+Thumb
2-Polyprenylphenol + Carbon dioxide + 4-Hydroxy-3-polyprenylbenzoate ↔ 4-Hydroxy-3-polyprenylbenzoate + 2-Polyprenylphenol
ReactionCard
ThumbThumb+Thumb
Thumb+ThumbThumb+Thumb
SMPDB Reactions:
Thumb+ThumbThumb+Thumb
PseudoCyc/BioCyc Reactions:
Thumb+ThumbThumb+Thumb
Thumb+ThumbThumb+Thumb
Complex Reactions: Not Available
Transports: Not Available
Metabolites:
PAMDB IDNameView
PAMDB0006222-OctaprenylphenolMetaboCard
PAMDB0044772-PolyprenylphenolMetaboCard
PAMDB0015783-Octaprenyl-4-hydroxybenzoateMetaboCard
PAMDB0041834-Hydroxy-3-polyprenylbenzoateMetaboCard
PAMDB000568Carbon dioxideMetaboCard
PAMDB001633Hydrogen ionMetaboCard
GO Classification:
Component
cell part
membrane
plasma membrane
Function
carbon-carbon lyase activity
carboxy-lyase activity
catalytic activity
lyase activity
Process
cellular metabolic process
coenzyme metabolic process
cofactor metabolic process
metabolic process
oxidoreduction coenzyme metabolic process
ubiquinone biosynthetic process
ubiquinone metabolic process
Gene Properties
Locus tag: PA5237
Strand: -
Entrez Gene ID: 880853
Accession: NP_253924.1
GI: 15600430
Sequence start: 5895261
Sequence End: 5896727
Sequence Length: 1466
Gene Sequence:
>PA5237
ATGACGTTCAAGGATCTCCGCGATTTCATCGCCCAGCTGGAGCAGCGCGGTGCGTTGAAGCGCATCCAGGTGCCGATTTCCCCCGTGCTCGAGATGACCGAGGTGTGCGACCGCACGTTGCGCGCCAAGGGCCCGGCATTGCTGTTCGAAAAGCCGACCGGCTTCGACATGCCGGTGCTCGGCAACCTGTTCGGTACGCCGGAGCGCGTGGCGCTGGGCATGGGCGCCGAGGACGTCGGCGCACTGCGCGAGATCGGCAAGCTGCTGGCGCAACTCAAGGAGCCCGAGCCGCCGAAGGGCCTCAAGGACGCCTGGGCCAAGCTGCCGATGTACAGGAAGGTCCTGTCCATGGCGCCGAAGGTGCTCAAGGACGCCCCCTGCCAGGAAGTGGTCGAGGAGGGCGAGGACGTCGACCTCGGCCGGCTGCCGGTCCAGACCTGCTGGCCGGGCGATGTCGGGCCGCTGATCACCTGGGGCCTGACCGTTACCCGCGGGCCGAACAAGGAACGGCAGAACCTGGGCATCTACCGCCAGCAGGTGATCGGCCGCAACAAGGTGATCATGCGCTGGCTCAGCCATCGCGGCGGCGCACTGGACTACCGCGAGTGGTGCCAGAAGCATCCGGGCCAGCCCTATCCGGTAGCCGTGGCGCTGGGCGCCGATCCGGCGACCATCCTCGGTGCGGTGACGCCGGTGCCGGACACCCTTTCCGAATACGCTTTCGCCGGCCTGTTGCGCGGGCATCGTACCGAGCTGGTCAAGTGTCGCGGGAGCGACTTGCAGGTGCCGGCCAGCGCCGAGATCGTCCTCGAAGGGGTGATCCACCCCGGCGAGATGGCCGACGAAGGCCCCTATGGCGATCACACCGGCTACTACAACGAGGTCGATCGCTTCCCGGTGTTCACCGTCGAGCGCGTCACCCGCCGGCAGAAACCGATCTACCACAGCACCTACACCGGGCGTCCGCCGGACGAGCCGGCGATCCTCGGGGTGGCGCTGAACGAAGTGTTCGTGCCGATCCTGCAGAAGCAGTTCCCGGAAATCGTCGATTTCTACCTGCCGCCGGAAGGTTGTTCCTACCGGATGGCGGTGGTGACCATGAAGAAGCAGTACCCAGGGCACGCCAAGCGCGTGATGCTCGGGGTCTGGTCGTTCCTGCGGCAGTTCATGTACACCAAGTTCGTCATCGTCACCGACGATGACATCGATGCGCGCGACTGGAACGATGTGATCTGGGCCATCACCACGCGGATGGACCCCAAGCGCGACACGGTGATGATCGACAACACGCCCATCGACTACCTCGACTTCGCCTCGCCGGTTTCCGGCCTCGGCTCGAAGATGGGGCTTGATGCCACCCACAAGTGGCCGGGCGAGACCAGCCGCGAATGGGGGCGCGCCATCGTCAAGGACGAAGCGGTGACACGGCGCATCGACGCCCTCTGGTCGAGCCTCGGGATCGACTGA
Protein Properties
Protein Residues: 488
Protein Molecular Weight: 54.6 kDa
Protein Theoretical pI: 6.53
Hydropathicity (GRAVY score): -0.265
Charge at pH 7 (predicted): -2.24
Protein Sequence:
>PA5237
MTFKDLRDFIAQLEQRGALKRIQVPISPVLEMTEVCDRTLRAKGPALLFEKPTGFDMPVLGNLFGTPERVALGMGAEDVGALREIGKLLAQLKEPEPPKGLKDAWAKLPMYRKVLSMAPKVLKDAPCQEVVEEGEDVDLGRLPVQTCWPGDVGPLITWGLTVTRGPNKERQNLGIYRQQVIGRNKVIMRWLSHRGGALDYREWCQKHPGQPYPVAVALGADPATILGAVTPVPDTLSEYAFAGLLRGHRTELVKCRGSDLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVDRFPVFTVERVTRRQKPIYHSTYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDIDARDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATHKWPGETSREWGRAIVKDEAVTRRIDALWSSLGID
References
External Links:
Resource Link
Genome ID: PA5237
Entrez Gene ID: 880853
NCBI Protein ID: 15600430
General Reference: PaperBLAST - Find papers about PA5237 and its homologs